J3_9KMV_006

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCGGCUUAAUUU*GGGAAACCUCACC*GGGCUGCACGC

Length

36 nucleotides

Bulged bases

9KMV|1|2|G|1256, 9KMV|1|2|A|1258, 9KMV|1|2|A|1259, 9KMV|1|2|U|1263, 9KMV|1|2|A|1265, 9KMV|1|2|U|1519, 9KMV|1|2|G|1520, 9KMV|1|2|C|1521, 9KMV|1|2|A|1522, 9KMV|1|2|C|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|G|1233
9KMV|1|2|C|1234
9KMV|1|2|G|1235
9KMV|1|2|G|1236
9KMV|1|2|C|1237
9KMV|1|2|U|1238
9KMV|1|2|U|1239
9KMV|1|2|A|1240
9KMV|1|2|A|1241
9KMV|1|2|U|1242
9KMV|1|2|U|1243
9KMV|1|2|U|1244
*
9KMV|1|2|G|1255
9KMV|1|2|G|1256
9KMV|1|2|G|1257
9KMV|1|2|A|1258
9KMV|1|2|A|1259
9KMV|1|2|A|1260
9KMV|1|2|C|1261
9KMV|1|2|C|1262
9KMV|1|2|U|1263
9KMV|1|2|C|1264
9KMV|1|2|A|1265
9KMV|1|2|C|1266
9KMV|1|2|C|1267
*
9KMV|1|2|G|1515
9KMV|1|2|G|1516
9KMV|1|2|G|1517
9KMV|1|2|C|1518
9KMV|1|2|U|1519
9KMV|1|2|G|1520
9KMV|1|2|C|1521
9KMV|1|2|A|1522
9KMV|1|2|C|1523
9KMV|1|2|G|1524
9KMV|1|2|C|1525

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

Small ribosomal subunit protein eS10

Chain P

Small ribosomal subunit protein uS19

Chain Q

Small ribosomal subunit protein uS9

Chain S

Small ribosomal subunit protein uS13

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31