J3_9KMV_007

3D structure

PDB id

9KMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARSr-MpCoV-GX Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCGGCCCGGAC*GGGUGGUGGU*GCCCUUAGAUGUCCGG

Length

37 nucleotides

Bulged bases

9KMV|1|2|C|1268, 9KMV|1|2|G|1275, 9KMV|1|2|U|1323, 9KMV|1|2|U|1326, 9KMV|1|2|G|1507, 9KMV|1|2|U|1509, 9KMV|1|2|C|1513, 9KMV|1|2|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMV|1|2|C|1267
9KMV|1|2|C|1268
9KMV|1|2|G|1269
9KMV|1|2|G|1270
9KMV|1|2|C|1271
9KMV|1|2|C|1272
9KMV|1|2|C|1273
9KMV|1|2|G|1274
9KMV|1|2|G|1275
9KMV|1|2|A|1276
9KMV|1|2|C|1277
*
9KMV|1|2|G|1320
9KMV|1|2|G|1321
9KMV|1|2|G|1322
9KMV|1|2|U|1323
9KMV|1|2|G|1324
9KMV|1|2|G|1325
9KMV|1|2|U|1326
9KMV|1|2|G|1327
9KMV|1|2|G|1328
9KMV|1|2|U|1329
*
9KMV|1|2|G|1500
9KMV|1|2|C|1501
9KMV|1|2|C|1502
9KMV|1|2|C|1503
9KMV|1|2|U|1504
9KMV|1|2|U|1505
9KMV|1|2|A|1506
9KMV|1|2|G|1507
9KMV|1|2|A|1508
9KMV|1|2|U|1509
9KMV|1|2|G|1510
9KMV|1|2|U|1511
9KMV|1|2|C|1512
9KMV|1|2|C|1513
9KMV|1|2|G|1514
9KMV|1|2|G|1515

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain P

Small ribosomal subunit protein uS19

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31