J3_9KMX_004

3D structure

PDB id

9KMX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CCAG*CAGUAA*UGAUUAAG

Length

18 nucleotides

Bulged bases

9KMX|1|2|A|1220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMX|1|2|C|1218
9KMX|1|2|C|1219
9KMX|1|2|A|1220
9KMX|1|2|G|1221
*
9KMX|1|2|C|1646
9KMX|1|2|A|1647
9KMX|1|2|G|1648
9KMX|1|2|U|1649
9KMX|1|2|A|1650
9KMX|1|2|A|1651
*
9KMX|1|2|U|1673
9KMX|1|2|G|1674
9KMX|1|2|A|1675
9KMX|1|2|U|1676
9KMX|1|2|U|1677
9KMX|1|2|A|1678
9KMX|1|2|A|1679
9KMX|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain T

Small ribosomal subunit protein eS19

Chain c

Small ribosomal subunit protein eS28