J3_9KMX_005
3D structure
- PDB id
- 9KMX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GCGGCUUAAUUUG*CGGGAAACCUCACC*GGGCUGCACGC
- Length
- 38 nucleotides
- Bulged bases
- 9KMX|1|2|G|1256, 9KMX|1|2|A|1258, 9KMX|1|2|G|1520, 9KMX|1|2|C|1521, 9KMX|1|2|A|1522, 9KMX|1|2|C|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMX|1|2|G|1233
9KMX|1|2|C|1234
9KMX|1|2|G|1235
9KMX|1|2|G|1236
9KMX|1|2|C|1237
9KMX|1|2|U|1238
9KMX|1|2|U|1239
9KMX|1|2|A|1240
9KMX|1|2|A|1241
9KMX|1|2|U|1242
9KMX|1|2|U|1243
9KMX|1|2|U|1244
9KMX|1|2|G|1245
*
9KMX|1|2|C|1254
9KMX|1|2|G|1255
9KMX|1|2|G|1256
9KMX|1|2|G|1257
9KMX|1|2|A|1258
9KMX|1|2|A|1259
9KMX|1|2|A|1260
9KMX|1|2|C|1261
9KMX|1|2|C|1262
9KMX|1|2|U|1263
9KMX|1|2|C|1264
9KMX|1|2|A|1265
9KMX|1|2|C|1266
9KMX|1|2|C|1267
*
9KMX|1|2|G|1515
9KMX|1|2|G|1516
9KMX|1|2|G|1517
9KMX|1|2|C|1518
9KMX|1|2|U|1519
9KMX|1|2|G|1520
9KMX|1|2|C|1521
9KMX|1|2|A|1522
9KMX|1|2|C|1523
9KMX|1|2|G|1524
9KMX|1|2|C|1525
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- Small ribosomal subunit protein eS10
- Chain P
- Small ribosomal subunit protein uS19
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- Small ribosomal subunit protein uS13
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
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