J3_9KMX_006
3D structure
- PDB id
- 9KMX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CCGGCCCGGAC*GGGUGGUGGUGCAU*AUGCCCUUAGAUGUCCGG
- Length
- 43 nucleotides
- Bulged bases
- 9KMX|1|2|C|1268, 9KMX|1|2|G|1274, 9KMX|1|2|G|1275, 9KMX|1|2|A|1276, 9KMX|1|2|U|1326, 9KMX|1|2|C|1331, 9KMX|1|2|G|1507, 9KMX|1|2|U|1509, 9KMX|1|2|C|1513, 9KMX|1|2|G|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMX|1|2|C|1267
9KMX|1|2|C|1268
9KMX|1|2|G|1269
9KMX|1|2|G|1270
9KMX|1|2|C|1271
9KMX|1|2|C|1272
9KMX|1|2|C|1273
9KMX|1|2|G|1274
9KMX|1|2|G|1275
9KMX|1|2|A|1276
9KMX|1|2|C|1277
*
9KMX|1|2|G|1320
9KMX|1|2|G|1321
9KMX|1|2|G|1322
9KMX|1|2|U|1323
9KMX|1|2|G|1324
9KMX|1|2|G|1325
9KMX|1|2|U|1326
9KMX|1|2|G|1327
9KMX|1|2|G|1328
9KMX|1|2|U|1329
9KMX|1|2|G|1330
9KMX|1|2|C|1331
9KMX|1|2|A|1332
9KMX|1|2|U|1333
*
9KMX|1|2|A|1498
9KMX|1|2|U|1499
9KMX|1|2|G|1500
9KMX|1|2|C|1501
9KMX|1|2|C|1502
9KMX|1|2|C|1503
9KMX|1|2|U|1504
9KMX|1|2|U|1505
9KMX|1|2|A|1506
9KMX|1|2|G|1507
9KMX|1|2|A|1508
9KMX|1|2|U|1509
9KMX|1|2|G|1510
9KMX|1|2|U|1511
9KMX|1|2|C|1512
9KMX|1|2|C|1513
9KMX|1|2|G|1514
9KMX|1|2|G|1515
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS3
- Chain K
- Small ribosomal subunit protein eS10
- Chain M
- Small ribosomal subunit protein eS12
- Chain P
- Small ribosomal subunit protein uS19
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
Coloring options: