J3_9KMY_006

3D structure

PDB id

9KMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NeoCoV Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

9KMY|1|2|U|1676

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMY|1|2|C|1218
9KMY|1|2|C|1219
9KMY|1|2|A|1220
9KMY|1|2|G|1221
*
9KMY|1|2|C|1645
9KMY|1|2|C|1646
9KMY|1|2|A|1647
9KMY|1|2|G|1648
9KMY|1|2|U|1649
9KMY|1|2|A|1650
9KMY|1|2|A|1651
*
9KMY|1|2|U|1673
9KMY|1|2|G|1674
9KMY|1|2|A|1675
9KMY|1|2|U|1676
9KMY|1|2|U|1677
9KMY|1|2|A|1678
9KMY|1|2|A|1679
9KMY|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain Q

Small ribosomal subunit protein uS9

Chain c

Small ribosomal subunit protein eS28