J3_9KMZ_004

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9KMZ|1|2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|A|938
9KMZ|1|2|U|939
9KMZ|1|2|U|940
9KMZ|1|2|C|941
*
9KMZ|1|2|G|985
9KMZ|1|2|G|986
9KMZ|1|2|A|987
9KMZ|1|2|C|988
9KMZ|1|2|C|989
9KMZ|1|2|A|990
9KMZ|1|2|G|991
9KMZ|1|2|A|992
9KMZ|1|2|G|993
*
9KMZ|1|2|C|1000
9KMZ|1|2|A|1001
9KMZ|1|2|U|1002
9KMZ|1|2|U|1003
9KMZ|1|2|U|1004

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain N

Small ribosomal subunit protein uS15

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26