J3_9KMZ_006
3D structure
- PDB id
- 9KMZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CCAG*CCAGUAAGUG*CGUUGAUUAAG
- Length
- 25 nucleotides
- Bulged bases
- 9KMZ|1|2|U|1672, 9KMZ|1|2|U|1676
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KMZ|1|2|C|1218
9KMZ|1|2|C|1219
9KMZ|1|2|A|1220
9KMZ|1|2|G|1221
*
9KMZ|1|2|C|1645
9KMZ|1|2|C|1646
9KMZ|1|2|A|1647
9KMZ|1|2|G|1648
9KMZ|1|2|U|1649
9KMZ|1|2|A|1650
9KMZ|1|2|A|1651
9KMZ|1|2|G|1652
9KMZ|1|2|U|1653
9KMZ|1|2|G|1654
*
9KMZ|1|2|C|1670
9KMZ|1|2|G|1671
9KMZ|1|2|U|1672
9KMZ|1|2|U|1673
9KMZ|1|2|G|1674
9KMZ|1|2|A|1675
9KMZ|1|2|U|1676
9KMZ|1|2|U|1677
9KMZ|1|2|A|1678
9KMZ|1|2|A|1679
9KMZ|1|2|G|1680
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS7
- Chain Q
- Small ribosomal subunit protein uS9
- Chain T
- Small ribosomal subunit protein eS19
- Chain U
- Small ribosomal subunit protein uS10
- Chain c
- Small ribosomal subunit protein eS28
- Chain d
- Small ribosomal subunit protein uS14
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