J3_9KMZ_007

3D structure

PDB id

9KMZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CCGGAC*GGGUGGUG*CCUUAGAUG

Length

23 nucleotides

Bulged bases

9KMZ|1|2|G|1275, 9KMZ|1|2|A|1276, 9KMZ|1|2|G|1321, 9KMZ|1|2|G|1322, 9KMZ|1|2|G|1325, 9KMZ|1|2|U|1326, 9KMZ|1|2|C|1503, 9KMZ|1|2|A|1506, 9KMZ|1|2|G|1507, 9KMZ|1|2|A|1508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KMZ|1|2|C|1272
9KMZ|1|2|C|1273
9KMZ|1|2|G|1274
9KMZ|1|2|G|1275
9KMZ|1|2|A|1276
9KMZ|1|2|C|1277
*
9KMZ|1|2|G|1320
9KMZ|1|2|G|1321
9KMZ|1|2|G|1322
9KMZ|1|2|U|1323
9KMZ|1|2|G|1324
9KMZ|1|2|G|1325
9KMZ|1|2|U|1326
9KMZ|1|2|G|1327
*
9KMZ|1|2|C|1502
9KMZ|1|2|C|1503
9KMZ|1|2|U|1504
9KMZ|1|2|U|1505
9KMZ|1|2|A|1506
9KMZ|1|2|G|1507
9KMZ|1|2|A|1508
9KMZ|1|2|U|1509
9KMZ|1|2|G|1510

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain K

Small ribosomal subunit protein eS10

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31