J3_9KN0_007

3D structure

PDB id

9KN0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat MERSr-CoV NL140422 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CCGGAC*GGGUG*CUUAGAUG

Length

19 nucleotides

Bulged bases

9KN0|1|2|G|1274, 9KN0|1|2|G|1321, 9KN0|1|2|A|1506, 9KN0|1|2|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KN0|1|2|C|1272
9KN0|1|2|C|1273
9KN0|1|2|G|1274
9KN0|1|2|G|1275
9KN0|1|2|A|1276
9KN0|1|2|C|1277
*
9KN0|1|2|G|1320
9KN0|1|2|G|1321
9KN0|1|2|G|1322
9KN0|1|2|U|1323
9KN0|1|2|G|1324
*
9KN0|1|2|C|1503
9KN0|1|2|U|1504
9KN0|1|2|U|1505
9KN0|1|2|A|1506
9KN0|1|2|G|1507
9KN0|1|2|A|1508
9KN0|1|2|U|1509
9KN0|1|2|G|1510

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS3

Chain K

Small ribosomal subunit protein eS10

Chain M

Small ribosomal subunit protein eS12

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31