J3_9KRP_006

3D structure

PDB id

9KRP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9KRP|1|S2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KRP|1|S2|A|938
9KRP|1|S2|U|939
9KRP|1|S2|U|940
9KRP|1|S2|C|941
*
9KRP|1|S2|G|985
9KRP|1|S2|G|986
9KRP|1|S2|A|987
9KRP|1|S2|C|988
9KRP|1|S2|C|989
9KRP|1|S2|A|990
9KRP|1|S2|G|991
9KRP|1|S2|A|992
9KRP|1|S2|G|993
*
9KRP|1|S2|C|1000
9KRP|1|S2|A|1001
9KRP|1|S2|U|1002
9KRP|1|S2|U|1003
9KRP|1|S2|U|1004

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26