J3_9KRP_012
3D structure
- PDB id
- 9KRP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HCV IRES-dependent 48S translation initiation complex with eIF5B and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KRP|1|S2|U|1340
9KRP|1|S2|C|1341||A
9KRP|1|S2|U|1342
9KRP|1|S2|U|1343
9KRP|1|S2|A|1344
9KRP|1|S2|G|1345
*
9KRP|1|S2|C|1384
9KRP|1|S2|G|1385
9KRP|1|S2|A|1386
9KRP|1|S2|G|1387
9KRP|1|S2|A|1388
9KRP|1|S2|C|1389
*
9KRP|1|S2|G|1481
9KRP|1|S2|C|1482
9KRP|1|S2|A|1483
9KRP|1|S2|A|1484
9KRP|1|S2|U|1485
9KRP|1|S2|A|1486
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- 40S ribosomal protein S3
- Chain SQ
- 40S ribosomal protein S16
- Chain SR
- 40S ribosomal protein S17
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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