J3_9KZX_001

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9KZX|1|L5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|C|112
9KZX|1|L5|A|113
9KZX|1|L5|G|114
9KZX|1|L5|C|115
9KZX|1|L5|G|116
*
9KZX|1|L5|C|155
9KZX|1|L5|G|156
9KZX|1|L5|U|157
9KZX|1|L5|A|158
9KZX|1|L5|C|159
9KZX|1|L5|G|160
*
9KZX|1|L5|C|275
9KZX|1|L5|C|276
9KZX|1|L5|G|277
9KZX|1|L5|G|278

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36