J3_9KZX_006

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9KZX|1|L5|G|959, 9KZX|1|L5|C|962, 9KZX|1|L5|G|965, 9KZX|1|L5|C|967, 9KZX|1|L5|C|968, 9KZX|1|L5|C|969, 9KZX|1|L5|U|971, 9KZX|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|C|712
9KZX|1|L5|C|713
*
9KZX|1|L5|G|955
9KZX|1|L5|A|956
9KZX|1|L5|G|957
9KZX|1|L5|G|958
9KZX|1|L5|G|959
9KZX|1|L5|A|960
9KZX|1|L5|G|961
9KZX|1|L5|C|962
9KZX|1|L5|G|963
9KZX|1|L5|A|964
9KZX|1|L5|G|965
9KZX|1|L5|A|966
9KZX|1|L5|C|967
9KZX|1|L5|C|968
9KZX|1|L5|C|969
9KZX|1|L5|G|970
9KZX|1|L5|U|971
9KZX|1|L5|C|972
9KZX|1|L5|G|973
9KZX|1|L5|C|974
9KZX|1|L5|C|975
9KZX|1|L5|G|976
*
9KZX|1|L5|C|1278
9KZX|1|L5|A|1279
9KZX|1|L5|C|1280
9KZX|1|L5|G|1281
9KZX|1|L5|G|1282
9KZX|1|L5|G|1283
9KZX|1|L5|G|1284

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32