J3_9KZX_009

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

9KZX|1|L5|A|1805, 9KZX|1|L5|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|U|1726
9KZX|1|L5|U|1727
*
9KZX|1|L5|A|1802
9KZX|1|L5|G|1803
9KZX|1|L5|A|1804
9KZX|1|L5|A|1805
9KZX|1|L5|G|1806
*
9KZX|1|L5|C|1832
9KZX|1|L5|G|1833
9KZX|1|L5|U|1834
9KZX|1|L5|G|1835
9KZX|1|L5|G|1836
9KZX|1|L5|A|1837

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29