J3_9KZX_011

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

9KZX|1|L5|U|2788, 9KZX|1|L5|A|2789, 9KZX|1|L5|U|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|G|2402
9KZX|1|L5|A|2403
9KZX|1|L5|A|2404
9KZX|1|L5|G|2405
*
9KZX|1|L5|C|2785
9KZX|1|L5|C|2786
9KZX|1|L5|A|2787
9KZX|1|L5|U|2788
9KZX|1|L5|A|2789
9KZX|1|L5|U|2790
9KZX|1|L5|C|2791
*
9KZX|1|L5|G|2800
9KZX|1|L5|U|2801
9KZX|1|L5|C|2802

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39