J3_9KZX_022

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9KZX|1|L5|U|4882, 9KZX|1|L5|A|4938, 9KZX|1|L5|C|4940, 9KZX|1|L5|A|4943, 9KZX|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L5|G|4751
9KZX|1|L5|U|4752
9KZX|1|L5|U|4753
9KZX|1|L5|G|4754
*
9KZX|1|L5|C|4879
9KZX|1|L5|C|4880
9KZX|1|L5|U|4881
9KZX|1|L5|U|4882
9KZX|1|L5|C|4883
*
9KZX|1|L5|G|4936
9KZX|1|L5|C|4937
9KZX|1|L5|A|4938
9KZX|1|L5|C|4939
9KZX|1|L5|C|4940
9KZX|1|L5|G|4941
9KZX|1|L5|C|4942
9KZX|1|L5|A|4943
9KZX|1|L5|C|4944
9KZX|1|L5|G|4945
9KZX|1|L5|U|4946
9KZX|1|L5|U|4947
9KZX|1|L5|C|4948

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a