J3_9KZX_024

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAUAC*GGC*GUG

Length

12 nucleotides

Bulged bases

9KZX|1|L7|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|L7|C|9
9KZX|1|L7|C|10
9KZX|1|L7|A|11
9KZX|1|L7|U|12
9KZX|1|L7|A|13
9KZX|1|L7|C|14
*
9KZX|1|L7|G|65
9KZX|1|L7|G|66
9KZX|1|L7|C|67
*
9KZX|1|L7|G|108
9KZX|1|L7|U|109
9KZX|1|L7|G|110

Current chains

Chain L7

5S_ribosomal_RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like

Chain LT

60S ribosomal protein L21