J3_9KZX_032

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

9KZX|1|S2|C|1138, 9KZX|1|S2|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|S2|C|1094
9KZX|1|S2|C|1095
9KZX|1|S2|G|1096
*
9KZX|1|S2|U|1136
9KZX|1|S2|U|1137
9KZX|1|S2|C|1138
9KZX|1|S2|C|1139
9KZX|1|S2|G|1140
*
9KZX|1|S2|C|1147
9KZX|1|S2|A|1148
9KZX|1|S2|A|1149
9KZX|1|S2|A|1150
9KZX|1|S2|G|1151

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS2

Chain SV

40S ribosomal protein S21

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26

Chain Sb

40S ribosomal protein S27