J3_9KZX_042

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGGUCUAGGGGUAUGAUUC*GAGGUCC*GA

Length

29 nucleotides

Bulged bases

9KZX|1|zy|G|16, 9KZX|1|zy|G|17, 9KZX|1|zy|G|18, 9KZX|1|zy|U|19, 9KZX|1|zy|G|22, 9KZX|1|zy|U|46

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|zy|U|7
9KZX|1|zy|U|8
9KZX|1|zy|G|9
9KZX|1|zy|G|10
9KZX|1|zy|U|11
9KZX|1|zy|C|12
9KZX|1|zy|U|13
9KZX|1|zy|A|14
9KZX|1|zy|G|15
9KZX|1|zy|G|16
9KZX|1|zy|G|17
9KZX|1|zy|G|18
9KZX|1|zy|U|19
9KZX|1|zy|A|20
9KZX|1|zy|U|21
9KZX|1|zy|G|22
9KZX|1|zy|A|23
9KZX|1|zy|U|24
9KZX|1|zy|U|25
9KZX|1|zy|C|26
*
9KZX|1|zy|G|42
9KZX|1|zy|A|43
9KZX|1|zy|G|44
9KZX|1|zy|G|45
9KZX|1|zy|U|46
9KZX|1|zy|C|47
9KZX|1|zy|C|48
*
9KZX|1|zy|G|64
9KZX|1|zy|A|65

Current chains

Chain zy

tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Se

40S ribosomal protein S30