J3_9KZX_043

3D structure

PDB id

9KZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the HCV IRES-dependently initiated CMV-stalled 80S ribosome (rotated state) in complexed with eIF3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAU*AGCCGAGUAG*CGAAAGGCCUUGUGG

Length

28 nucleotides

Bulged bases

9KZX|1|zz|U|281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KZX|1|zz|C|139
9KZX|1|zz|A|140
9KZX|1|zz|U|141
*
9KZX|1|zz|A|252
9KZX|1|zz|G|253
9KZX|1|zz|C|254
9KZX|1|zz|C|255
9KZX|1|zz|G|256
9KZX|1|zz|A|257
9KZX|1|zz|G|258
9KZX|1|zz|U|259
9KZX|1|zz|A|260
9KZX|1|zz|G|261
*
9KZX|1|zz|C|272
9KZX|1|zz|G|273
9KZX|1|zz|A|274
9KZX|1|zz|A|275
9KZX|1|zz|A|276
9KZX|1|zz|G|277
9KZX|1|zz|G|278
9KZX|1|zz|C|279
9KZX|1|zz|C|280
9KZX|1|zz|U|281
9KZX|1|zz|U|282
9KZX|1|zz|G|283
9KZX|1|zz|U|284
9KZX|1|zz|G|285
9KZX|1|zz|G|286

Current chains

Chain zz

HCV IRES

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA