J3_9MDS_016

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUUGGAU*AAUUG*CG

Length

15 nucleotides

Bulged bases

9MDS|1|D|U|524

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MDS|1|D|U|522
9MDS|1|D|U|523
9MDS|1|D|U|524
9MDS|1|D|U|525
9MDS|1|D|G|526
9MDS|1|D|G|527
9MDS|1|D|A|528
9MDS|1|D|U|529
*
9MDS|1|D|A|541
9MDS|1|D|A|542
9MDS|1|D|U|543
9MDS|1|D|U|544
9MDS|1|D|G|545
*
9MDS|1|D|C|589
9MDS|1|D|G|590

Current chains

Chain D

RNA (598-MER)

Nearby chains