J3_9MDS_022

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*UUCCUCAUGAUG*CUAUAAG

Length

21 nucleotides

Bulged bases

9MDS|1|F|U|357

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MDS|1|F|C|248
9MDS|1|F|G|249
*
9MDS|1|F|U|347
9MDS|1|F|U|348
9MDS|1|F|C|349
9MDS|1|F|C|350
9MDS|1|F|U|351
9MDS|1|F|C|352
9MDS|1|F|A|353
9MDS|1|F|U|354
9MDS|1|F|G|355
9MDS|1|F|A|356
9MDS|1|F|U|357
9MDS|1|F|G|358
*
9MDS|1|F|C|373
9MDS|1|F|U|374
9MDS|1|F|A|375
9MDS|1|F|U|376
9MDS|1|F|A|377
9MDS|1|F|A|378
9MDS|1|F|G|379

Current chains

Chain F

RNA (598-MER)

Nearby chains