J3_9MDS_031

3D structure

PDB id

9MDS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ROOL RNA nanocage (env-120)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCAAUAGACGU*AAAGAAA*UAAUACCAAAUAAG

Length

33 nucleotides

Bulged bases

9MDS|1|H|C|256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MDS|1|H|C|254
9MDS|1|H|G|255
9MDS|1|H|C|256
9MDS|1|H|A|257
9MDS|1|H|A|258
9MDS|1|H|U|259
9MDS|1|H|A|260
9MDS|1|H|G|261
9MDS|1|H|A|262
9MDS|1|H|C|263
9MDS|1|H|G|264
9MDS|1|H|U|265
*
9MDS|1|H|A|281
9MDS|1|H|A|282
9MDS|1|H|A|283
9MDS|1|H|G|284
9MDS|1|H|A|285
9MDS|1|H|A|286
9MDS|1|H|A|287
*
9MDS|1|H|U|329
9MDS|1|H|A|330
9MDS|1|H|A|331
9MDS|1|H|U|332
9MDS|1|H|A|333
9MDS|1|H|C|334
9MDS|1|H|C|335
9MDS|1|H|A|336
9MDS|1|H|A|337
9MDS|1|H|A|338
9MDS|1|H|U|339
9MDS|1|H|A|340
9MDS|1|H|A|341
9MDS|1|H|G|342

Current chains

Chain H

RNA (598-MER)

Nearby chains

Chain E

RNA (598-MER)

Chain G

RNA (598-MER)