J3_9MNC_020
3D structure
- PDB id
- 9MNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to small molecule SW393071
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GGGGGCG*CUCGCUUCUGGCGCCAAG*CGAC
- Length
- 29 nucleotides
- Bulged bases
- 9MNC|1|L5|C|4096, 9MNC|1|L5|C|4116, 9MNC|1|L5|U|4117, 9MNC|1|L5|U|4118, 9MNC|1|L5|C|4119, 9MNC|1|L5|U|4120, 9MNC|1|L5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9MNC|1|L5|G|4091
9MNC|1|L5|G|4092
9MNC|1|L5|G|4093
9MNC|1|L5|G|4094
9MNC|1|L5|G|4095
9MNC|1|L5|C|4096
9MNC|1|L5|G|4097
*
9MNC|1|L5|C|4112
9MNC|1|L5|U|4113
9MNC|1|L5|C|4114
9MNC|1|L5|G|4115
9MNC|1|L5|C|4116
9MNC|1|L5|U|4117
9MNC|1|L5|U|4118
9MNC|1|L5|C|4119
9MNC|1|L5|U|4120
9MNC|1|L5|G|4121
9MNC|1|L5|G|4122
9MNC|1|L5|C|4123
9MNC|1|L5|G|4124
9MNC|1|L5|C|4125
9MNC|1|L5|C|4126
9MNC|1|L5|A|4127
9MNC|1|L5|A|4128
9MNC|1|L5|G|4129
*
9MNC|1|L5|C|4155
9MNC|1|L5|G|4156
9MNC|1|L5|A|4157
9MNC|1|L5|C|4158
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2
- Chain LG
- Large ribosomal subunit protein eL8
- Chain LZ
- Large ribosomal subunit protein eL27
- Chain Lc
- Large ribosomal subunit protein eL30
- Chain Lg
- Large ribosomal subunit protein eL34
- Chain Lp
- Large ribosomal subunit protein eL43
Coloring options: