J3_9MNC_036
3D structure
- PDB id
- 9MNC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to small molecule SW393071
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9MNC|1|S2|G|1256, 9MNC|1|S2|A|1258, 9MNC|1|S2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9MNC|1|S2|C|1237
9MNC|1|S2|PSU|1238
9MNC|1|S2|U|1239
9MNC|1|S2|A|1240
9MNC|1|S2|A|1241
9MNC|1|S2|U|1242
9MNC|1|S2|U|1243
9MNC|1|S2|PSU|1244
*
9MNC|1|S2|G|1255
9MNC|1|S2|G|1256
9MNC|1|S2|G|1257
9MNC|1|S2|A|1258
9MNC|1|S2|A|1259
9MNC|1|S2|A|1260
9MNC|1|S2|C|1261
9MNC|1|S2|C|1262
9MNC|1|S2|U|1263
9MNC|1|S2|C|1264
9MNC|1|S2|A|1265
9MNC|1|S2|C|1266
*
9MNC|1|S2|G|1516
9MNC|1|S2|G|1517
9MNC|1|S2|C|1518
9MNC|1|S2|U|1519
9MNC|1|S2|G|1520
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS19
- Chain ST
- Small ribosomal subunit protein uS13
- Chain SZ
- Small ribosomal subunit protein uS10
- Chain Sf
- Small ribosomal subunit protein uS14
Coloring options: