J3_9MQ4_005

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9MQ4|1|1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MQ4_005 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.071

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9MQ4|1|1|G|297
9MQ4|1|1|G|298
9MQ4|1|1|A|299
9MQ4|1|1|A|300
9MQ4|1|1|G|301
*
9MQ4|1|1|C|316
9MQ4|1|1|G|317
9MQ4|1|1|C|318
9MQ4|1|1|G|319
9MQ4|1|1|A|320
9MQ4|1|1|U|321
9MQ4|1|1|A|322
9MQ4|1|1|C|323
9MQ4|1|1|A|324
9MQ4|1|1|G|325
*
9MQ4|1|1|C|337
9MQ4|1|1|G|338
9MQ4|1|1|U|339
9MQ4|1|1|A|340
9MQ4|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL4

Chain U

50S ribosomal protein L24