J3_9MQ4_006

3D structure

PDB id

9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

9MQ4|1|1|U|686, 9MQ4|1|1|A|792, 9MQ4|1|1|A|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MQ4_006 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0818

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9MQ4|1|1|U|683
9MQ4|1|1|G|684
9MQ4|1|1|A|685
9MQ4|1|1|U|686
9MQ4|1|1|C|687
9MQ4|1|1|U|688
9MQ4|1|1|A|689
*
9MQ4|1|1|U|773
9MQ4|1|1|G|774
9MQ4|1|1|G|775
*
9MQ4|1|1|C|791
9MQ4|1|1|A|792
9MQ4|1|1|A|793
9MQ4|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain d

50S ribosomal protein L34