J3_9MQ4_021
3D structure
- PDB id
- 9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CGG*CUUG*CG
- Length
- 9 nucleotides
- Bulged bases
- 9MQ4|1|2|U|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9MQ4_021 not in the Motif Atlas
- Geometric match to J3_5J7L_002
- Geometric discrepancy: 0.1009
- The information below is about J3_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9MQ4|1|2|C|586
9MQ4|1|2|G|587
9MQ4|1|2|G|588
*
9MQ4|1|2|C|651
9MQ4|1|2|U|652
9MQ4|1|2|U|653
9MQ4|1|2|G|654
*
9MQ4|1|2|C|754
9MQ4|1|2|G|755
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain m
- Small ribosomal subunit protein uS8
- Chain q
- Small ribosomal subunit protein uS12
- Chain t
- Small ribosomal subunit protein uS15
- Chain v
- Small ribosomal subunit protein uS17
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