J3_9MQ4_029
3D structure
- PDB id
- 9MQ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Damaged 70S ribosome with PrfH bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 9MQ4|1|2|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9MQ4_029 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.1268
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9MQ4|1|2|C|990
9MQ4|1|2|U|991
9MQ4|1|2|U|992
9MQ4|1|2|G|993
9MQ4|1|2|A|994
9MQ4|1|2|C|995
9MQ4|1|2|A|996
9MQ4|1|2|U|997
*
9MQ4|1|2|A|1044
9MQ4|1|2|C|1045
9MQ4|1|2|A|1046
9MQ4|1|2|G|1047
*
9MQ4|1|2|C|1210
9MQ4|1|2|U|1211
9MQ4|1|2|U|1212
9MQ4|1|2|A|1213
9MQ4|1|2|C|1214
9MQ4|1|2|G|1215
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain s
- Small ribosomal subunit protein uS14
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