J3_9MR4_021

3D structure

PDB id

9MR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

NAC: Ribosome nascent chain complex(Oxa1L)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

9MR4|1|5|U|4882, 9MR4|1|5|A|4938, 9MR4|1|5|C|4940, 9MR4|1|5|A|4943, 9MR4|1|5|C|4944, 9MR4|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MR4|1|5|C|4749
9MR4|1|5|G|4750
9MR4|1|5|G|4751
9MR4|1|5|U|4752
9MR4|1|5|U|4753
9MR4|1|5|G|4754
*
9MR4|1|5|C|4879
9MR4|1|5|C|4880
9MR4|1|5|U|4881
9MR4|1|5|U|4882
9MR4|1|5|C|4883
*
9MR4|1|5|G|4936
9MR4|1|5|C|4937
9MR4|1|5|A|4938
9MR4|1|5|C|4939
9MR4|1|5|C|4940
9MR4|1|5|G|4941
9MR4|1|5|C|4942
9MR4|1|5|A|4943
9MR4|1|5|C|4944
9MR4|1|5|G|4945
9MR4|1|5|U|4946
9MR4|1|5|U|4947
9MR4|1|5|C|4948
9MR4|1|5|G|4949
9MR4|1|5|U|4950
9MR4|1|5|G|4951

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

60S ribosomal protein L14

Chain O

Large ribosomal subunit protein uL13

Chain f

eL33