J3_9MTQ_004
3D structure
- PDB id
- 9MTQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 9MTQ|1|1A|U|72, 9MTQ|1|1A|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9MTQ_004 not in the Motif Atlas
- Geometric match to J3_9DFE_004
- Geometric discrepancy: 0.0438
- The information below is about J3_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9MTQ|1|1A|A|56
9MTQ|1|1A|C|57
*
9MTQ|1|1A|G|70
9MTQ|1|1A|A|71
9MTQ|1|1A|U|72
9MTQ|1|1A|A|73
9MTQ|1|1A|A|74
9MTQ|1|1A|G|75
9MTQ|1|1A|C|76
*
9MTQ|1|1A|G|110
9MTQ|1|1A|A|111
9MTQ|1|1A|U|112
9MTQ|1|1A|G|113
9MTQ|1|1A|U|114
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 12
- 50S ribosomal protein L29
- Chain 17
- 50S ribosomal protein L34
- Chain 1X
- 50S ribosomal protein L23
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