J3_9MTQ_045

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTQ_045 not in the Motif Atlas

Geometric match to J3_9DFE_008

Geometric discrepancy: 0.0528

The information below is about J3_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9MTQ|1|2A|C|698
9MTQ|1|2A|A|699
9MTQ|1|2A|G|700
*
9MTQ|1|2A|C|732
9MTQ|1|2A|G|733
9MTQ|1|2A|A|734
9MTQ|1|2A|A|735
9MTQ|1|2A|C|736
*
9MTQ|1|2A|G|760
9MTQ|1|2A|A|761
9MTQ|1|2A|U|762
9MTQ|1|2A|G|763

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2