J3_9MTQ_064

3D structure

PDB id

9MTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGD-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

9MTQ|1|2a|A|975, 9MTQ|1|2a|G|976, 9MTQ|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTQ_064 not in the Motif Atlas

Geometric match to J3_4LFB_004

Geometric discrepancy: 0.0737

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9MTQ|1|2a|U|955
9MTQ|1|2a|U|956
9MTQ|1|2a|U|957
9MTQ|1|2a|A|958
9MTQ|1|2a|A|959
9MTQ|1|2a|U|960
9MTQ|1|2a|U|961
9MTQ|1|2a|C|962
*
9MTQ|1|2a|G|973
9MTQ|1|2a|A|974
9MTQ|1|2a|A|975
9MTQ|1|2a|G|976
9MTQ|1|2a|A|977
9MTQ|1|2a|A|978
9MTQ|1|2a|C|979
9MTQ|1|2a|C|980
9MTQ|1|2a|U|981
9MTQ|1|2a|U|982
9MTQ|1|2a|A|983
9MTQ|1|2a|C|984
*
9MTQ|1|2a|G|1221
9MTQ|1|2a|G|1222
9MTQ|1|2a|C|1223
9MTQ|1|2a|G|1224
9MTQ|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Peptide chain release factor 1