J3_9MTR_009

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAG*CUUUAAAGAGUG*CUCAC

Length

21 nucleotides

Bulged bases

9MTR|1|1A|U|1083, 9MTR|1|1A|A|1088

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTR|1|1A|G|1055
9MTR|1|1A|G|1056
9MTR|1|1A|A|1057
9MTR|1|1A|G|1058
*
9MTR|1|1A|C|1080
9MTR|1|1A|U|1081
9MTR|1|1A|U|1082
9MTR|1|1A|U|1083
9MTR|1|1A|A|1084
9MTR|1|1A|A|1085
9MTR|1|1A|A|1086
9MTR|1|1A|G|1087
9MTR|1|1A|A|1088
9MTR|1|1A|G|1089
9MTR|1|1A|U|1090
9MTR|1|1A|G|1091
*
9MTR|1|1A|C|1100
9MTR|1|1A|U|1101
9MTR|1|1A|C|1102
9MTR|1|1A|A|1103
9MTR|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36