J3_9MTS_063

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

9MTS|1|2a|A|975, 9MTS|1|2a|G|976, 9MTS|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9MTS_063 not in the Motif Atlas

Geometric match to J3_4LFB_004

Geometric discrepancy: 0.0712

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9MTS|1|2a|U|955
9MTS|1|2a|U|956
9MTS|1|2a|U|957
9MTS|1|2a|A|958
9MTS|1|2a|A|959
9MTS|1|2a|U|960
9MTS|1|2a|U|961
9MTS|1|2a|C|962
*
9MTS|1|2a|G|973
9MTS|1|2a|A|974
9MTS|1|2a|A|975
9MTS|1|2a|G|976
9MTS|1|2a|A|977
9MTS|1|2a|A|978
9MTS|1|2a|C|979
9MTS|1|2a|C|980
9MTS|1|2a|U|981
9MTS|1|2a|U|982
9MTS|1|2a|A|983
9MTS|1|2a|C|984
*
9MTS|1|2a|G|1221
9MTS|1|2a|G|1222
9MTS|1|2a|C|1223
9MTS|1|2a|G|1224
9MTS|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Peptide chain release factor 1