J3_9N2B_001
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GC*GGAAUAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2B_001 not in the Motif Atlas
- Geometric match to J3_5J7L_001
- Geometric discrepancy: 0.0466
- The information below is about J3_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9N2B|1|16|G|46
9N2B|1|16|C|47
*
9N2B|1|16|G|361
9N2B|1|16|G|362
9N2B|1|16|A|363
9N2B|1|16|A|364
9N2B|1|16|U|365
9N2B|1|16|A|366
9N2B|1|16|U|367
*
9N2B|1|16|A|393
9N2B|1|16|G|394
9N2B|1|16|C|395
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain SL
- Small ribosomal subunit protein uS12
- Chain SP
- 30S ribosomal protein S16
Coloring options: