3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GC*GGAAUAU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9N2B_001 not in the Motif Atlas
Geometric match to J3_5J7L_001
Geometric discrepancy: 0.0466
The information below is about J3_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.4
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

9N2B|1|16|G|46
9N2B|1|16|C|47
*
9N2B|1|16|G|361
9N2B|1|16|G|362
9N2B|1|16|A|363
9N2B|1|16|A|364
9N2B|1|16|U|365
9N2B|1|16|A|366
9N2B|1|16|U|367
*
9N2B|1|16|A|393
9N2B|1|16|G|394
9N2B|1|16|C|395

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SL
Small ribosomal subunit protein uS12
Chain SP
30S ribosomal protein S16

Coloring options:


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