3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CGG*CUUG*CG
Length
9 nucleotides
Bulged bases
9N2B|1|16|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9N2B_003 not in the Motif Atlas
Geometric match to J3_5J7L_002
Geometric discrepancy: 0.0902
The information below is about J3_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_56052.5
Basepair signature
cWW-F-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

9N2B|1|16|C|586
9N2B|1|16|G|587
9N2B|1|16|G|588
*
9N2B|1|16|C|651
9N2B|1|16|U|652
9N2B|1|16|U|653
9N2B|1|16|G|654
*
9N2B|1|16|C|754
9N2B|1|16|G|755

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SH
30S ribosomal protein S8
Chain SL
Small ribosomal subunit protein uS12
Chain SO
30S ribosomal protein S15
Chain SQ
30S ribosomal protein S17

Coloring options:


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