3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
9N2B|1|16|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9N2B_010 not in the Motif Atlas
Homologous match to J3_5J7L_007
Geometric discrepancy: 0.1211
The information below is about J3_5J7L_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

9N2B|1|16|C|990
9N2B|1|16|U|991
9N2B|1|16|U|992
9N2B|1|16|G|993
*
9N2B|1|16|C|1045
9N2B|1|16|A|1046
9N2B|1|16|G|1047
*
9N2B|1|16|C|1210
9N2B|1|16|U|1211
9N2B|1|16|U|1212
9N2B|1|16|A|1213
9N2B|1|16|C|1214
9N2B|1|16|G|1215

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SN
30S ribosomal protein S14

Coloring options:


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