J3_9N2B_011
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 9N2B|1|16|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2B_011 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.1103
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9N2B|1|16|C|990
9N2B|1|16|U|991
9N2B|1|16|U|992
9N2B|1|16|G|993
9N2B|1|16|A|994
9N2B|1|16|C|995
9N2B|1|16|A|996
9N2B|1|16|U|997
*
9N2B|1|16|A|1044
9N2B|1|16|C|1045
9N2B|1|16|A|1046
9N2B|1|16|G|1047
*
9N2B|1|16|C|1210
9N2B|1|16|U|1211
9N2B|1|16|U|1212
9N2B|1|16|A|1213
9N2B|1|16|C|1214
9N2B|1|16|G|1215
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain SN
- 30S ribosomal protein S14
Coloring options: