3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
9N2B|1|16|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9N2B_016 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.1098
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

9N2B|1|16|U|1116
9N2B|1|16|A|1117
9N2B|1|16|U|1118
*
9N2B|1|16|A|1155
9N2B|1|16|G|1156
9N2B|1|16|A|1157
9N2B|1|16|C|1158
9N2B|1|16|U|1159
9N2B|1|16|G|1160
9N2B|1|16|C|1161
*
9N2B|1|16|G|1175
9N2B|1|16|A|1176
9N2B|1|16|G|1177
9N2B|1|16|G|1178
9N2B|1|16|A|1179
9N2B|1|16|A|1180
9N2B|1|16|G|1181
9N2B|1|16|G|1182
9N2B|1|16|U|1183
9N2B|1|16|G|1184

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SB
30S ribosomal protein S2
Chain SG
30S ribosomal protein S7
Chain SI
30S ribosomal protein S9
Chain SJ
30S ribosomal protein S10
Chain SN
30S ribosomal protein S14

Coloring options:


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