J3_9N2B_021
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9N2B|1|23|U|72, 9N2B|1|23|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2B_021 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.0501
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9N2B|1|23|A|56
9N2B|1|23|C|57
*
9N2B|1|23|G|70
9N2B|1|23|A|71
9N2B|1|23|U|72
9N2B|1|23|A|73
9N2B|1|23|A|74
9N2B|1|23|G|75
9N2B|1|23|C|76
*
9N2B|1|23|G|110
9N2B|1|23|A|111
9N2B|1|23|U|112
9N2B|1|23|U|113
9N2B|1|23|U|114
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LW
- 50S ribosomal protein L23
- Chain Lc
- 50S ribosomal protein L29
- Chain Lh
- 50S ribosomal protein L34
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