J3_9N2B_022

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9N2B|1|23|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2B_022 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0468

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9N2B|1|23|G|297
9N2B|1|23|G|298
9N2B|1|23|A|299
9N2B|1|23|A|300
9N2B|1|23|G|301
*
9N2B|1|23|C|316
9N2B|1|23|G|317
9N2B|1|23|C|318
9N2B|1|23|G|319
9N2B|1|23|A|320
9N2B|1|23|U|321
9N2B|1|23|A|322
9N2B|1|23|C|323
9N2B|1|23|A|324
9N2B|1|23|G|325
*
9N2B|1|23|C|337
9N2B|1|23|G|338
9N2B|1|23|U|339
9N2B|1|23|A|340
9N2B|1|23|C|341

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LD

Large ribosomal subunit protein uL4

Chain LX

50S ribosomal protein L24