3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
9N2B|1|23|U|686, 9N2B|1|23|A|792, 9N2B|1|23|A|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9N2B_023 not in the Motif Atlas
Homologous match to J3_5J7L_038
Geometric discrepancy: 0.0529
The information below is about J3_5J7L_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

9N2B|1|23|U|683
9N2B|1|23|G|684
9N2B|1|23|A|685
9N2B|1|23|U|686
9N2B|1|23|C|687
9N2B|1|23|U|688
9N2B|1|23|A|689
*
9N2B|1|23|U|773
9N2B|1|23|G|774
9N2B|1|23|G|775
*
9N2B|1|23|C|791
9N2B|1|23|A|792
9N2B|1|23|A|793
9N2B|1|23|A|794

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LB
50S ribosomal protein L2
Chain Lh
50S ribosomal protein L34

Coloring options:


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