J3_9N2B_023
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9N2B|1|23|U|686, 9N2B|1|23|A|792, 9N2B|1|23|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2B_023 not in the Motif Atlas
- Homologous match to J3_5J7L_038
- Geometric discrepancy: 0.0529
- The information below is about J3_5J7L_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9N2B|1|23|U|683
9N2B|1|23|G|684
9N2B|1|23|A|685
9N2B|1|23|U|686
9N2B|1|23|C|687
9N2B|1|23|U|688
9N2B|1|23|A|689
*
9N2B|1|23|U|773
9N2B|1|23|G|774
9N2B|1|23|G|775
*
9N2B|1|23|C|791
9N2B|1|23|A|792
9N2B|1|23|A|793
9N2B|1|23|A|794
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LB
- 50S ribosomal protein L2
- Chain Lh
- 50S ribosomal protein L34
Coloring options: