J3_9N2B_024

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2B_024 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0698

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

9N2B|1|23|C|698
9N2B|1|23|A|699
9N2B|1|23|G|700
*
9N2B|1|23|C|732
9N2B|1|23|G|733
9N2B|1|23|A|734
9N2B|1|23|A|735
9N2B|1|23|C|736
*
9N2B|1|23|G|760
9N2B|1|23|A|761
9N2B|1|23|U|762
9N2B|1|23|G|763

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LB

50S ribosomal protein L2