J3_9N2B_030
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9N2B|1|23|A|2388, 9N2B|1|23|U|2390, 9N2B|1|23|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2B_030 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0574
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9N2B|1|23|G|2282
9N2B|1|23|C|2283
9N2B|1|23|A|2284
*
9N2B|1|23|U|2384
9N2B|1|23|C|2385
9N2B|1|23|A|2386
9N2B|1|23|U|2387
9N2B|1|23|A|2388
9N2B|1|23|G|2389
9N2B|1|23|U|2390
9N2B|1|23|G|2391
9N2B|1|23|A|2392
9N2B|1|23|U|2393
9N2B|1|23|C|2394
9N2B|1|23|C|2395
*
9N2B|1|23|G|2421
9N2B|1|23|C|2422
9N2B|1|23|U|2423
9N2B|1|23|C|2424
9N2B|1|23|A|2425
9N2B|1|23|A|2426
9N2B|1|23|C|2427
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LO
- 50S ribosomal protein L15
- Chain La
- 50S ribosomal protein L27
- Chain Lg
- 50S ribosomal protein L33
- Chain Li
- 50S ribosomal protein L35
Coloring options: