3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
9N2B|1|23|A|2518, 9N2B|1|23|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9N2B_033 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.0543
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

9N2B|1|23|C|2517
9N2B|1|23|A|2518
9N2B|1|23|U|2519
9N2B|1|23|C|2520
*
9N2B|1|23|G|2545
9N2B|1|23|U|2546
9N2B|1|23|A|2547
*
9N2B|1|23|U|2561
9N2B|1|23|U|2562
9N2B|1|23|U|2563
9N2B|1|23|A|2564
9N2B|1|23|A|2565
9N2B|1|23|A|2566
9N2B|1|23|G|2567

Current chains

Chain 23
23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LC
50S ribosomal protein L3
Chain LN
50S ribosomal protein L14

Coloring options:


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