J3_9N2B_036
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GCAGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 9N2B|1|5|U|14, 9N2B|1|5|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9N2B_036 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.0748
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9N2B|1|5|G|10
9N2B|1|5|C|11
9N2B|1|5|A|12
9N2B|1|5|G|13
9N2B|1|5|U|14
9N2B|1|5|A|15
9N2B|1|5|G|16
*
9N2B|1|5|C|68
9N2B|1|5|G|69
9N2B|1|5|C|70
*
9N2B|1|5|G|106
9N2B|1|5|G|107
9N2B|1|5|A|108
9N2B|1|5|A|109
9N2B|1|5|C|110
Current chains
- Chain 5
- 5S ribosomal RNA (rRNA) from the B operon
Nearby chains
- Chain 23
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- 50S ribosomal protein L18
- Chain LY
- 50S ribosomal protein L25
- Chain La
- 50S ribosomal protein L27
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