J3_9N2C_010

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

9N2C|1|16|U|1212, 9N2C|1|16|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2C_010 not in the Motif Atlas

Geometric match to J3_5J7L_007

Geometric discrepancy: 0.1118

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

9N2C|1|16|C|990
9N2C|1|16|U|991
9N2C|1|16|U|992
9N2C|1|16|G|993
*
9N2C|1|16|C|1045
9N2C|1|16|A|1046
9N2C|1|16|G|1047
*
9N2C|1|16|C|1210
9N2C|1|16|U|1211
9N2C|1|16|U|1212
9N2C|1|16|A|1213
9N2C|1|16|C|1214
9N2C|1|16|G|1215

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain SN

30S ribosomal protein S14