J3_9N2C_011

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9N2C|1|16|U|1212, 9N2C|1|16|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9N2C_011 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1082

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9N2C|1|16|C|990
9N2C|1|16|U|991
9N2C|1|16|U|992
9N2C|1|16|G|993
9N2C|1|16|A|994
9N2C|1|16|C|995
9N2C|1|16|A|996
9N2C|1|16|U|997
*
9N2C|1|16|A|1044
9N2C|1|16|C|1045
9N2C|1|16|A|1046
9N2C|1|16|G|1047
*
9N2C|1|16|C|1210
9N2C|1|16|U|1211
9N2C|1|16|U|1212
9N2C|1|16|A|1213
9N2C|1|16|C|1214
9N2C|1|16|G|1215

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnH operon

Nearby chains

Chain SN

30S ribosomal protein S14